Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SES68154.1 | SET25370.1 | SAMN04487772_1026 | SAMN04487772_11242 | Isopropylmalate/homocitrate/citramalate synthases. | Acetolactate synthase, large subunit. | 0.643 |
SES68154.1 | SET37320.1 | SAMN04487772_1026 | SAMN04487772_11736 | Isopropylmalate/homocitrate/citramalate synthases. | Branched chain amino acid aminotransferase apoenzyme. | 0.941 |
SES68154.1 | SET39718.1 | SAMN04487772_1026 | SAMN04487772_11839 | Isopropylmalate/homocitrate/citramalate synthases. | Acetolactate synthase, large subunit. | 0.643 |
SES68154.1 | SET41017.1 | SAMN04487772_1026 | SAMN04487772_11915 | Isopropylmalate/homocitrate/citramalate synthases. | Acetolactate synthase, large subunit. | 0.643 |
SES68154.1 | ilvC | SAMN04487772_1026 | SAMN04487772_11263 | Isopropylmalate/homocitrate/citramalate synthases. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.853 |
SES68154.1 | ilvD | SAMN04487772_1026 | SAMN04487772_11243 | Isopropylmalate/homocitrate/citramalate synthases. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.964 |
SES68154.1 | leuB | SAMN04487772_1026 | SAMN04487772_11244 | Isopropylmalate/homocitrate/citramalate synthases. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.859 |
SES68154.1 | leuC | SAMN04487772_1026 | SAMN04487772_13124 | Isopropylmalate/homocitrate/citramalate synthases. | 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.974 |
SES91769.1 | SET25370.1 | SAMN04487772_10578 | SAMN04487772_11242 | Threonine dehydratase. | Acetolactate synthase, large subunit. | 0.968 |
SES91769.1 | SET37320.1 | SAMN04487772_10578 | SAMN04487772_11736 | Threonine dehydratase. | Branched chain amino acid aminotransferase apoenzyme. | 0.960 |
SES91769.1 | SET39718.1 | SAMN04487772_10578 | SAMN04487772_11839 | Threonine dehydratase. | Acetolactate synthase, large subunit. | 0.891 |
SES91769.1 | SET41017.1 | SAMN04487772_10578 | SAMN04487772_11915 | Threonine dehydratase. | Acetolactate synthase, large subunit. | 0.894 |
SES91769.1 | ilvC | SAMN04487772_10578 | SAMN04487772_11263 | Threonine dehydratase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.798 |
SES91769.1 | ilvD | SAMN04487772_10578 | SAMN04487772_11243 | Threonine dehydratase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.959 |
SES91769.1 | leuB | SAMN04487772_10578 | SAMN04487772_11244 | Threonine dehydratase. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.931 |
SES91769.1 | leuC | SAMN04487772_10578 | SAMN04487772_13124 | Threonine dehydratase. | 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.458 |
SET25370.1 | SES68154.1 | SAMN04487772_11242 | SAMN04487772_1026 | Acetolactate synthase, large subunit. | Isopropylmalate/homocitrate/citramalate synthases. | 0.643 |
SET25370.1 | SES91769.1 | SAMN04487772_11242 | SAMN04487772_10578 | Acetolactate synthase, large subunit. | Threonine dehydratase. | 0.968 |
SET25370.1 | SET37320.1 | SAMN04487772_11242 | SAMN04487772_11736 | Acetolactate synthase, large subunit. | Branched chain amino acid aminotransferase apoenzyme. | 0.690 |
SET25370.1 | SET39718.1 | SAMN04487772_11242 | SAMN04487772_11839 | Acetolactate synthase, large subunit. | Acetolactate synthase, large subunit. | 0.568 |
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