STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET48298.1HAMP domain-containing protein. (512 aa)    
Predicted Functional Partners:
SET48314.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.982
SES79957.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.930
SET41326.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.924
SET45668.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.923
SET04570.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.919
SES80499.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.915
SET44498.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.911
SET05218.1
Two-component system, chemotaxis family, response regulator CheV.
   
 0.909
SET37050.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 0.897
SET41341.1
Signal transduction histidine kinase.
 
0.883
Your Current Organism:
Clostridium polysaccharolyticum
NCBI taxonomy Id: 29364
Other names: ATCC 33142, Fusobacterium polysaccharolyticum, [. polysaccharolyticum, [Clostridium] polysaccharolyticum, strain B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.