SET64121.1 protein (Clostridium polysaccharolyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SET64121.1

Hypothetical protein. (347 aa)

Predicted Functional Partners:

SET49269.1

0.994

SET40022.1

0.985

SES92613.1

0.980

SES92628.1

0.963

SES73464.1

0.949

SET49288.1

0.949

SES92583.1

0.846

SET42771.1

0.803

SET42727.1

0.797

SET05102.1

0.779

Your Current Organism:

Clostridium polysaccharolyticum

NCBI taxonomy Id: 29364
Other names: ATCC 33142, Fusobacterium polysaccharolyticum, [. polysaccharolyticum, [Clostridium] polysaccharolyticum, strain B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SES73464.1	SES92583.1	SAMN04487772_102222	SAMN04487772_105115	Acyl transferase domain-containing protein.	Phosphopantetheine attachment site.	0.999
SES73464.1	SES92613.1	SAMN04487772_102222	SAMN04487772_105117	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SES73464.1	SES92628.1	SAMN04487772_102222	SAMN04487772_105118	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.997
SES73464.1	SET05102.1	SAMN04487772_102222	SAMN04487772_10792	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SES73464.1	SET40022.1	SAMN04487772_102222	SAMN04487772_11852	Acyl transferase domain-containing protein.	Phosphopantetheine attachment site.	0.999
SES73464.1	SET42727.1	SAMN04487772_102222	SAMN04487772_1206	Acyl transferase domain-containing protein.	Yersiniabactin salicyl-AMP ligase.	0.978
SES73464.1	SET42771.1	SAMN04487772_102222	SAMN04487772_1208	Acyl transferase domain-containing protein.	Pyochelin synthetase.	0.999
SES73464.1	SET49269.1	SAMN04487772_102222	SAMN04487772_12515	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SES73464.1	SET49288.1	SAMN04487772_102222	SAMN04487772_12516	Acyl transferase domain-containing protein.	Thioester reductase domain-containing protein.	0.993
SES73464.1	SET64121.1	SAMN04487772_102222	SAMN04487772_1432	Acyl transferase domain-containing protein.	Hypothetical protein.	0.949
SES92583.1	SES73464.1	SAMN04487772_105115	SAMN04487772_102222	Phosphopantetheine attachment site.	Acyl transferase domain-containing protein.	0.999
SES92583.1	SES92613.1	SAMN04487772_105115	SAMN04487772_105117	Phosphopantetheine attachment site.	Amino acid adenylation domain-containing protein.	0.999
SES92583.1	SES92628.1	SAMN04487772_105115	SAMN04487772_105118	Phosphopantetheine attachment site.	Acyl transferase domain-containing protein.	0.999
SES92583.1	SET05102.1	SAMN04487772_105115	SAMN04487772_10792	Phosphopantetheine attachment site.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SES92583.1	SET40022.1	SAMN04487772_105115	SAMN04487772_11852	Phosphopantetheine attachment site.	Phosphopantetheine attachment site.	0.999
SES92583.1	SET42727.1	SAMN04487772_105115	SAMN04487772_1206	Phosphopantetheine attachment site.	Yersiniabactin salicyl-AMP ligase.	0.999
SES92583.1	SET42771.1	SAMN04487772_105115	SAMN04487772_1208	Phosphopantetheine attachment site.	Pyochelin synthetase.	0.999
SES92583.1	SET49269.1	SAMN04487772_105115	SAMN04487772_12515	Phosphopantetheine attachment site.	Acyl transferase domain-containing protein.	0.999
SES92583.1	SET49288.1	SAMN04487772_105115	SAMN04487772_12516	Phosphopantetheine attachment site.	Thioester reductase domain-containing protein.	0.999
SES92583.1	SET64121.1	SAMN04487772_105115	SAMN04487772_1432	Phosphopantetheine attachment site.	Hypothetical protein.	0.846