Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ybhSInner membrane transport permease YbhS. (407 aa)    
Predicted Functional Partners:
mdtN
Multidrug resistance protein MdtN.
 
  
 0.959
OOM82593.1
ABC-2 family transporter protein.
 
 
 
0.926
emrK_2
Putative multidrug resistance protein EmrK.
 
  
 0.745
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
  
 
 0.724
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
 
 0.724
ytrB
ABC transporter ATP-binding protein YtrB.
  
 
 0.722
emrK_1
Putative multidrug resistance protein EmrK.
 
  
 0.674
ecsA
ABC-type transporter ATP-binding protein EcsA.
  
 
 0.664
grsB_3
Gramicidin S synthase 2.
  
  
 0.658
czcB
Cobalt-zinc-cadmium resistance protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.653
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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