Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hin_1DNA-invertase hin. (538 aa)    
Predicted Functional Partners:
hin_3
DNA-invertase hin.
 
     0.659
bin3_1
Putative transposon Tn552 DNA-invertase.
  
     0.583
bin3_2
Putative transposon Tn552 DNA-invertase.
  
     0.566
dpnM
Modification methylase DpnIIA.
 
  
 0.542
OOM81776.1
Phage terminase small subunit.
  
    0.541
OOM82568.1
Hypothetical protein.
       0.524
OOM72902.1
Phage terminase small subunit.
  
    0.510
tnpR
Transposon Tn3 resolvase.
  
     0.468
pinR
Putative DNA-invertase from lambdoid prophage Rac.
  
     0.458
xerC_4
Tyrosine recombinase XerC.
 
  
 0.457
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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