Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpfG_1Cyclic di-GMP phosphodiesterase response regulator RpfG. (417 aa)    
Predicted Functional Partners:
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.716
ycdT_2
Putative diguanylate cyclase YcdT.
 
 
 0.702
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.687
cph2_4
Phytochrome-like protein cph2.
 
 
 0.656
ydaM_2
Putative diguanylate cyclase YdaM.
  
   
 0.630
cph2_6
Phytochrome-like protein cph2.
 
  
 0.617
ribBA_1
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.616
ribBA_2
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.616
pleD_1
Response regulator PleD.
 
 
 0.605
ydaM_1
Putative diguanylate cyclase YdaM.
  
 
 0.603
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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