Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
grsB_1Gramicidin S synthase 2. (575 aa)    
Predicted Functional Partners:
grsB_3
Gramicidin S synthase 2.
 
0.994
lgrD_4
Linear gramicidin synthase subunit D.
 0.991
dltA
D-alanine--poly(phosphoribitol) ligase subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to [...]
 
 0.978
dhbF
Dimodular nonribosomal peptide synthase.
 
0.952
grsB_5
Gramicidin S synthase 2; Belongs to the ATP-dependent AMP-binding enzyme family.
 
    
0.920
lgrD_1
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
 
0.916
tycC_2
Tyrocidine synthase 3.
  
 
 0.915
lgrD_3
Linear gramicidin synthase subunit D.
 
0.905
ppsC_1
Plipastatin synthase subunit C.
 
0.903
mbtB_1
Phenyloxazoline synthase MbtB.
 
 
0.882
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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