Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82530.1Hypothetical protein. (47 aa)    
Predicted Functional Partners:
OOM82529.1
Integrase core domain protein.
 
  
 0.799
OOM74914.1
Hypothetical protein.
  
     0.772
OOM70040.1
Transposase.
  
     0.766
OOM70041.1
Hypothetical protein.
 
  
 0.747
OOM76063.1
Integrase core domain protein.
 
  
 0.745
OOM82531.1
Hypothetical protein.
       0.701
OOM75875.1
Hypothetical protein.
 
  
 0.504
OOM71283.1
Hypothetical protein.
 
  
 0.497
OOM82384.1
SMI1 / KNR4 family protein.
  
     0.406
OOM81826.1
Bacterial Ig-like domain protein.
  
     0.403
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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