Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msmE_1Multiple sugar-binding protein precursor. (435 aa)    
Predicted Functional Partners:
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.996
ycjO
Inner membrane ABC transporter permease protein YcjO.
 
 0.973
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
 0.884
ugpC_2
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
 0.884
lacF_2
Lactose transport system permease protein LacF.
 
 0.843
araP_1
L-arabinose transport system permease protein AraP.
 
 0.836
ugpA_2
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
 0.827
araQ_12
L-arabinose transport system permease protein AraQ.
 
 0.818
ugpA_5
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
 0.806
araP_2
L-arabinose transport system permease protein AraP.
 
 0.801
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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