Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ypdA_1Sensor histidine kinase YpdA. (602 aa)    
Predicted Functional Partners:
OOM82460.1
Putative response regulatory protein.
 
 
 0.978
OOM78782.1
Putative response regulatory protein.
 
 
 0.894
OOM76271.1
Putative response regulatory protein.
 
 
 0.858
OOM82246.1
Putative response regulatory protein.
 
 
 0.832
OOM71644.1
Putative response regulatory protein.
 
 
 0.815
OOM75660.1
Putative response regulatory protein.
 
 
 0.814
OOM75162.1
Putative response regulatory protein.
 
 
 0.814
yesS_2
HTH-type transcriptional regulator YesS.
 
 
 0.794
lytR_3
Sensory transduction protein LytR.
 
 
 0.789
rpfC
Sensory/regulatory protein RpfC.
    
 0.777
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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