Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
yteP_1Putative multiple-sugar transport system permease YteP. (320 aa)    
Predicted Functional Partners:
lipO
Lipoprotein LipO precursor.
 
 
 0.993
araQ_2
L-arabinose transport system permease protein AraQ.
 
 
 0.970
OOM78776.1
Hypothetical protein.
 
 
 0.938
araQ_11
L-arabinose transport system permease protein AraQ.
 
 
 0.924
araQ_5
L-arabinose transport system permease protein AraQ.
 
 
 0.921
araQ_6
L-arabinose transport system permease protein AraQ.
 
 
 0.872
OOM78788.1
Putative sugar-binding periplasmic protein precursor.
 
 
 0.839
OOM78787.1
Bacterial extracellular solute-binding protein.
 
 
 0.833
OOM73533.1
Bacterial extracellular solute-binding protein.
 
 
 0.816
sugB
Trehalose transport system permease protein SugB.
 
 
 0.811
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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