Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82495.1Hypothetical protein. (468 aa)    
Predicted Functional Partners:
OOM76284.1
Hypothetical protein.
    
 0.701
OOM81788.1
Phage head-tail joining protein.
  
 
 0.689
OOM82179.1
Phage portal protein.
  
 
 0.640
OOM81784.1
Phage portal protein.
  
 
 0.640
OOM72905.1
Phage Mu protein F like protein.
  
 
 0.640
OOM71088.1
Phage tail protein.
  
   0.611
OOM71087.1
Prophage endopeptidase tail.
  
   0.606
glpQ1
Putative glycerophosphoryl diester phosphodiesterase 1.
    
   0.567
OOM82333.1
Hypothetical protein.
   
   0.546
OOM74007.1
Hypothetical protein.
   
   0.546
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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