Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82508.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
OOM71106.1
Phage tail sheath protein.
 
 
 0.965
OOM81791.1
Phage tail sheath protein.
 
 
 0.964
OOM71098.1
Hypothetical protein.
 
 
 0.958
OOM81798.1
Hypothetical protein.
 
 
 0.957
OOM72919.1
Phage tail sheath protein.
 
 
 0.954
OOM72927.1
Hypothetical protein.
 
 
 0.945
OOM71102.1
Hypothetical protein.
 
 
 0.931
OOM72928.1
Baseplate J-like protein.
 
 
 0.926
OOM81799.1
Baseplate J-like protein.
 
 
 0.925
OOM71097.1
Baseplate J-like protein.
 
 
 0.923
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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