Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM82415.1Periplasmic [NiFeSe] hydrogenase large subunit. (472 aa)    
Predicted Functional Partners:
OOM82414.1
Periplasmic [NiFeSe] hydrogenase small subunit precursor.
 
 0.999
hyaD_1
Hydrogenase 1 maturation protease.
 
 
 0.989
hypA_1
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.986
hypB_1
Hydrogenase isoenzymes nickel incorporation protein HypB.
 
  
 0.951
hypD
Hydrogenase isoenzymes formation protein HypD.
 
 
 0.916
OOM75817.1
Coenzyme F420-reducing hydrogenase subunit beta.
  
 0.912
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.889
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.889
hypC
Hydrogenase isoenzymes formation protein HypC.
 
 
 0.888
hypF
Carbamoyltransferase HypF.
 
 
 
 0.886
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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