Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82367.1RNA polymerase sigma factor. (155 aa)    
Predicted Functional Partners:
OOM82366.1
Helix-turn-helix domain protein.
 
     0.952
OOM81668.1
Hypothetical protein.
  
   
 0.794
OOM73801.1
Antirestriction protein (ArdA).
  
   
 0.793
OOM70584.1
Hypothetical protein.
  
   
 0.792
OOM70581.1
Replication initiation factor.
  
   
 0.782
OOM73799.1
Replication initiation factor.
  
   
 0.780
OOM73806.1
Conjugative transposon protein TcpC.
 
  
 0.774
ftsK
DNA translocase FtsK.
  
   
 0.774
iap_3
Putative endopeptidase p60 precursor.
  
  
 0.773
OOM81667.1
Hypothetical protein.
  
     0.770
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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