Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82340.1Hypothetical protein. (207 aa)    
Predicted Functional Partners:
OOM82341.1
Hypothetical protein; L-fucose isomerase, C-terminal domain.
 
   
 0.910
xylB
Xylulose kinase.
  
  
 0.846
rhaB
Rhamnulokinase.
 
  
 0.713
glpK_3
Glycerol kinase.
  
  
 0.699
fucK
L-fuculokinase.
  
  
 0.531
OOM79330.1
Hypothetical protein.
 
   
 0.501
OOM82283.1
Hypothetical protein.
  
     0.469
ilvE
Branched-chain-amino-acid aminotransferase.
   
    0.454
OOM82595.1
Major facilitator superfamily protein.
  
     0.451
OOM80583.1
Bacterial type II secretion system protein F domain protein.
   
    0.443
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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