Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yecSInner membrane amino-acid ABC transporter permease protein YecS. (220 aa)    
Predicted Functional Partners:
artM_1
Arginine transport ATP-binding protein ArtM.
 0.999
glnH_2
Glutamine-binding periplasmic protein precursor.
 0.998
glnH_1
Glutamine-binding periplasmic protein precursor.
 0.996
glnQ_1
Glutamine transport ATP-binding protein GlnQ.
 0.986
glnQ_2
Glutamine transport ATP-binding protein GlnQ.
 0.986
artM_2
Arginine transport ATP-binding protein ArtM.
 0.986
tcyN_1
L-cystine import ATP-binding protein TcyN.
 0.980
tcyN_2
L-cystine import ATP-binding protein TcyN.
 0.980
tcyN_3
L-cystine import ATP-binding protein TcyN.
 0.980
glnQ_4
Glutamine transport ATP-binding protein GlnQ.
 0.980
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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