Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82312.1Terminase small subunit. (254 aa)    
Predicted Functional Partners:
OOM82313.1
Hypothetical protein.
 
    0.825
OOM82314.1
Hypothetical protein.
 
    0.728
OOM72903.1
Phage terminase large subunit.
 
  
 0.728
OOM82315.1
Phage portal protein, SPP1 Gp6-like.
  
  
 0.723
OOM82316.1
NAD(+)--arginine ADP-ribosyltransferase EFV.
 
   
 0.720
xkdM_1
Phage-like element PBSX protein XkdM.
 
  
 0.716
OOM82331.1
Phage XkdN-like protein.
 
  
 0.711
dpnM
Modification methylase DpnIIA.
 
    0.706
OOM82320.1
Hypothetical protein.
  
  
 0.669
OOM72921.1
Phage XkdN-like protein.
  
  
 0.652
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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