Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM82197.1Putative cyclase. (188 aa)    
Predicted Functional Partners:
adcR
Transcriptional regulator AdcR.
 
     0.854
accB_2
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
  0.757
kce
3-keto-5-aminohexanoate cleavage enzyme.
  
  
 0.660
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
     
  0.657
OOM74516.1
Hypothetical protein; Iron only hydrogenase large subunit, C-terminal domain.
    
  0.630
hndD_1
NADP-reducing hydrogenase subunit HndC.
     
  0.619
ttdA
L(+)-tartrate dehydratase subunit alpha.
    
  0.603
fumB
Fumarate hydratase class I, anaerobic.
     
  0.599
cfiB_1
2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
     
  0.599
pflB
Formate acetyltransferase.
     
  0.599
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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