STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comEAComE operon protein 1. (244 aa)    
Predicted Functional Partners:
epsF_1
Type II secretion system protein F.
  
  
 0.848
OOM79270.1
Hypothetical protein.
   
  
 0.839
gspE
Putative type II secretion system protein E.
  
  
 0.800
comC_1
Type 4 prepilin-like protein leader peptide-processing enzyme; Belongs to the peptidase A24 family.
  
  
 0.747
comC_2
Type 4 prepilin-like protein leader peptide-processing enzyme.
  
  
 0.718
pilE
Fimbrial protein precursor.
  
  
 0.702
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
     
 0.690
OOM79271.1
DNA utilization protein GntX.
  
  
 0.690
OOM75058.1
ComEC family competence protein.
  
  
 0.689
rlmCD_1
23S rRNA (uracil-C(5))-methyltransferase RlmCD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
     0.679
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.