STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_1D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family. (415 aa)    
Predicted Functional Partners:
spoVD_2
Stage V sporulation protein D.
 
 
 0.898
dacF
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
  
0.845
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
  
  
 
0.841
penA
Penicillin-binding protein 2B.
  
 
 0.835
pbpA
Penicillin-binding protein A.
  
 
 0.834
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
  
  
 
0.832
pbpF
Penicillin-binding protein 1F.
     
 0.806
OOM75723.1
Putative peptidoglycan binding domain protein.
  
 
 0.754
OOM82503.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.650
comEA
ComE operon protein 1.
     
 0.628
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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