Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifA_1Nif-specific regulatory protein. (917 aa)    
Predicted Functional Partners:
rpoN1
RNA polymerase sigma-54 factor 1.
 
 
 
 0.906
manX_1
PTS system mannose-specific EIIAB component.
 
  
 0.674
OOM75739.1
Phage shock protein A homolog.
   
 
 0.653
OOM71297.1
Hypothetical protein.
   
 
 0.653
agaC_1
N-acetylgalactosamine permease IIC component 1.
 
  
 0.633
manZ_1
Mannose permease IID component.
 
  
 0.600
OOM82260.1
Putative phosphotransferase enzyme IIB component.
 
   
 0.587
manX_2
PTS system mannose-specific EIIAB component.
 
  
 0.587
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.576
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.576
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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