Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
asbF3-dehydroshikimate dehydratase. (248 aa)    
Predicted Functional Partners:
rihA
Pyrimidine-specific ribonucleoside hydrolase RihA.
     
 0.779
OOM82273.1
Hypothetical protein.
       0.773
fruA_1
PTS system fructose-specific EIIABC component.
  
 
  0.758
fruA_3
PTS system fructose-specific EIIABC component.
  
 
  0.758
pheA
P-protein.
     
 0.664
ulaF_1
L-ribulose-5-phosphate 4-epimerase UlaF.
    
 0.650
ulaF_2
L-ribulose-5-phosphate 4-epimerase UlaF.
    
 0.650
OOM76825.1
Hypothetical protein.
  
  
  0.650
uxaC
Uronate isomerase.
    
  0.631
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
  0.621
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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