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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOM82181.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
OOM82182.1
Hypothetical protein.
       0.773
OOM71089.1
Hypothetical protein.
  
  
 0.744
OOM74005.1
Hypothetical protein.
  
  
 0.709
OOM82180.1
Hypothetical protein.
       0.705
OOM81373.1
Hypothetical protein.
  
  
 0.682
OOM81825.1
Hypothetical protein.
  
  
 0.676
OOM71086.1
Hypothetical protein.
  
  
 0.676
OOM71095.1
Hypothetical protein.
  
  
 0.676
OOM82329.1
Phage tail sheath protein.
  
  
 0.675
OOM81791.1
Phage tail sheath protein.
  
  
 0.675
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.