STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOM82188.1N-acetylmuramoyl-L-alanine amidase. (174 aa)    
Predicted Functional Partners:
lytB_2
Putative endo-beta-N-acetylglucosaminidase precursor.
  
 
 0.838
OOM82185.1
Hypothetical protein.
       0.773
OOM82186.1
Bacteriophage holin.
       0.773
OOM82187.1
Hypothetical protein.
       0.773
gluP
Rhomboid protease GluP.
  
   0.747
OOM79790.1
Hypothetical protein.
    
   0.724
OOM75730.1
Hypothetical protein.
   
 0.603
OOM82189.1
Hypothetical protein.
       0.462
OOM82190.1
Hypothetical protein.
       0.462
lytG
Exo-glucosaminidase LytG precursor.
  
 
 0.450
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.