Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82172.1Hypothetical protein. (360 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family.
 
 
 0.808
fgs
Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
  
    0.579
lytB_2
Putative endo-beta-N-acetylglucosaminidase precursor.
 
  
  0.518
OOM77551.1
Hypothetical protein.
  
     0.512
blaI
Penicillinase repressor.
    
  0.497
nag3
beta-N-acetylglucosaminidase/beta-glucosidase.
  
  
  0.487
engD_1
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.471
celA_2
Endoglucanase A precursor.
     
 0.471
celE_3
Endoglucanase E precursor.
     
 0.471
engD_2
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.471
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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