Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM82163.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
OOM82165.1
Hypothetical protein.
 
     0.922
dnaJ_1
Chaperone protein DnaJ.
 
    0.895
OOM81054.1
Hypothetical protein.
  
     0.634
rpiR_3
HTH-type transcriptional regulator RpiR.
  
     0.580
OOM74282.1
Hypothetical protein.
  
     0.552
yhaM
3'-5' exoribonuclease YhaM.
  
     0.548
OOM75027.1
Flagellar hook-length control protein FliK.
  
     0.547
OOM71124.1
LysM domain protein.
  
     0.520
OOM75125.1
Hypothetical protein.
  
     0.459
OOM80993.1
SpoIIIAH-like protein.
  
     0.440
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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