Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fliUFlagellar biosynthetic protein FliU. (397 aa)    
Predicted Functional Partners:
OOM75028.1
Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.757
OOM82146.1
Hypothetical protein.
       0.633
OOM77924.1
Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.631
OOM82148.1
Hypothetical protein.
       0.576
fliS
Flagellar protein FliS.
  
  
 0.491
flgK
Flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
    0.484
fliA_1
RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family.
  
  
 0.462
fliA_2
RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family.
  
  
 0.462
sigD
RNA polymerase sigma-D factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.462
sigK_3
RNA polymerase sigma-28 factor precursor; Belongs to the sigma-70 factor family.
  
  
 0.462
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (10%) [HD]