Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lytB_1Putative endo-beta-N-acetylglucosaminidase precursor. (421 aa)    
Predicted Functional Partners:
lytA_13
Autolysin.
  
     0.774
toxB_2
Toxin B.
  
     0.771
lytA_3
Autolysin.
  
     0.762
yttA
Putative membrane protein YttA.
  
     0.728
OOM77220.1
Choline/ethanolamine kinase.
  
     0.721
OOM77574.1
HIRAN domain protein.
  
     0.662
OOM73776.1
Putative RNA polymerase sigma factor SigI.
  
     0.579
OOM73899.1
Hypothetical protein.
  
     0.572
OOM75287.1
Hypothetical protein.
  
     0.569
OOM80264.1
Helix-turn-helix domain protein.
  
     0.568
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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