Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
spoVB_1Stage V sporulation protein B. (511 aa)    
Predicted Functional Partners:
mazG
Nucleoside triphosphate pyrophosphohydrolase.
  
    0.806
spoVT
Stage V sporulation protein T.
 
   
 0.730
OOM82050.1
Ribosome-associated heat shock protein Hsp15.
  
    0.699
OOM81479.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.695
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
  
     0.686
sigH
RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.
  
    0.625
OOM82048.1
Spore cortex protein YabQ.
 
  
 0.623
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.574
yabP
Spore protein YabP.
  
  
 0.534
mreC
Cell shape-determining protein MreC precursor; Involved in formation and maintenance of cell shape.
 
    0.508
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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