STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF_2Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
gsiD_2
Glutathione transport system permease protein GsiD.
 
 0.990
gsiC
Glutathione transport system permease protein GsiC.
 
 0.973
oppC_3
Oligopeptide transport system permease protein OppC.
 
 0.959
oppC_1
Oligopeptide transport system permease protein OppC.
 
 0.951
ddpC
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.947
gsiD_1
Glutathione transport system permease protein GsiD.
 
 0.938
oppC_2
Oligopeptide transport system permease protein OppC.
 
 0.935
gsiD_3
Glutathione transport system permease protein GsiD.
 
 0.930
oppB
Oligopeptide transport system permease protein OppB.
 
 0.920
dppB_2
Dipeptide transport system permease protein DppB.
 
 0.914
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.