Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pflA_1Pyruvate formate-lyase 1-activating enzyme; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (169 aa)    
Predicted Functional Partners:
pflB
Formate acetyltransferase.
 
 
 0.964
nrdD
Anaerobic ribonucleoside-triphosphate reductase.
 
  
 0.859
cobU
Bifunctional adenosylcobalamin biosynthesis protein CobU.
   
    0.789
adhE_1
Aldehyde-alcohol dehydrogenase.
 
 
 0.700
adhE_2
Aldehyde-alcohol dehydrogenase.
 
 
 0.698
mdh_1
NAD-dependent methanol dehydrogenase.
 
 
 0.693
dhaT
1,3-propanediol dehydrogenase.
  
 
 0.653
mdh_2
NAD-dependent methanol dehydrogenase.
  
 
 0.653
fucO
Lactaldehyde reductase.
  
 
 0.653
OOM71478.1
5'-nucleotidase.
 
      0.613
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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