Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM81859.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
OOM81860.1
Hypothetical protein.
 
   
 0.960
OOM69967.1
Hypothetical protein.
  
     0.595
OOM82150.1
Hypothetical protein; TfoX C-terminal domain.
  
     0.554
OOM74130.1
Hpt domain protein.
  
     0.514
OOM78508.1
Radical SAM superfamily protein.
  
     0.508
OOM82347.1
Calcineurin-like phosphoesterase superfamily domain protein.
  
     0.497
icaR
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR.
  
     0.473
OOM81057.1
Hypothetical protein.
  
     0.470
OOM73856.1
Major facilitator superfamily protein.
  
     0.446
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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