Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csgDCsgBAC operon transcriptional regulatory protein. (253 aa)    
Predicted Functional Partners:
patB
Cystathionine beta-lyase PatB.
    
   0.734
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.697
pucR_3
Purine catabolism regulatory protein.
  
     0.564
tpa
Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.561
OOM73430.1
18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.
    
   0.538
OOM72500.1
Hypothetical protein; Belongs to the small heat shock protein (HSP20) family.
    
   0.538
OOM77146.1
D-hydantoinase.
  
     0.506
glnB_1
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
    0.500
degU_3
Transcriptional regulatory protein DegU.
  
  
 0.493
degU_2
Transcriptional regulatory protein DegU.
  
  
 0.490
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.