Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
oppD_3Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (335 aa)    
Predicted Functional Partners:
oppC_2
Oligopeptide transport system permease protein OppC.
 0.989
oppB
Oligopeptide transport system permease protein OppB.
 
 0.989
gsiD_2
Glutathione transport system permease protein GsiD.
 0.981
oppC_3
Oligopeptide transport system permease protein OppC.
 0.980
oppC_1
Oligopeptide transport system permease protein OppC.
 0.974
oppF_4
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
0.973
ddpC
Putative D,D-dipeptide transport system permease protein DdpC.
 0.966
oppA
Oligopeptide-binding protein OppA precursor.
 
 
 0.963
gsiD_1
Glutathione transport system permease protein GsiD.
 0.953
gsiD_3
Glutathione transport system permease protein GsiD.
 0.945
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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