Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lytA_2Autolysin. (445 aa)    
Predicted Functional Partners:
lytB_7
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.773
lytB_6
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.770
OOM76342.1
Cadherin-like beta sandwich domain protein.
  
     0.760
OOM77220.1
Choline/ethanolamine kinase.
  
     0.708
OOM77574.1
HIRAN domain protein.
  
     0.668
OOM75287.1
Hypothetical protein.
  
     0.665
OOM82033.1
Hypothetical protein.
  
     0.634
OOM73899.1
Hypothetical protein.
  
     0.621
OOM78549.1
Hypothetical protein.
  
     0.612
tuaE
Teichuronic acid biosynthesis protein TuaE.
  
     0.594
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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