Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM81909.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
yutF
Putative hydrolase YutF; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
  
    0.638
cheX
CheY-P phosphatase CheX.
       0.599
cheY_1
Chemotaxis protein CheY.
       0.599
mdh_1
NAD-dependent methanol dehydrogenase.
   
    0.502
phoR_9
Alkaline phosphatase synthesis sensor protein PhoR.
   
    0.486
minD
Septum site-determining protein MinD.
  
    0.484
cheD_1
Chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
   
    0.414
dhaT
1,3-propanediol dehydrogenase.
   
    0.412
adhE_1
Aldehyde-alcohol dehydrogenase.
   
    0.412
mdh_2
NAD-dependent methanol dehydrogenase.
   
    0.412
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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