Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tetD_3Transposon Tn10 TetD protein. (222 aa)    
Predicted Functional Partners:
adaA_5
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
  
  0.815
araC_1
Arabinose operon regulatory protein.
 
 
 0.812
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
   0.806
melR_8
Melibiose operon regulatory protein.
  
 
   0.797
adaA_6
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
  
  0.795
melR_2
Melibiose operon regulatory protein.
  
   0.776
rhaS_4
HTH-type transcriptional activator RhaS.
  
   0.770
adaA_4
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.769
virF
Virulence regulon transcriptional activator VirF.
  
     0.769
rhaS_6
HTH-type transcriptional activator RhaS.
  
     0.768
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.