Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
spoVD_1Stage V sporulation protein D. (555 aa)    
Predicted Functional Partners:
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.943
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.940
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.900
divIB
Cell division protein DivIB; Essential cell division protein.
 
 
 0.834
pbpF
Penicillin-binding protein 1F.
 
 
 0.831
ftsL
Cell division protein FtsL.
  
 
 0.797
ftsB
Cell division protein FtsB.
  
 
 0.748
mreC
Cell shape-determining protein MreC precursor; Involved in formation and maintenance of cell shape.
 
 
 0.737
OOM75723.1
Putative peptidoglycan binding domain protein.
    
 0.731
OOM74339.1
O-antigen ligase.
  
   
 0.722
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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