Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ldhB_1L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. (315 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.986
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.986
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.945
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.942
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.942
icd
Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.904
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.892
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 0.888
grsB_3
Gramicidin S synthase 2.
  
 0.883
hacA
Homoaconitase large subunit.
  
 0.867
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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