Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xerD_4Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (335 aa)    
Predicted Functional Partners:
xerC_8
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.764
xerD_1
Tyrosine recombinase XerD.
  
     0.761
xerD_9
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.669
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.660
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.660
OOM81800.1
YopX protein.
  
    0.633
OOM81802.1
Hypothetical protein.
       0.628
OOM81803.1
37-kD nucleoid-associated bacterial protein.
       0.628
OOM81804.1
Hypothetical protein.
       0.607
soj_1
Sporulation initiation inhibitor protein Soj.
 
   
 0.580
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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