Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OOM81677.1Hypothetical protein; PSP1 C-terminal conserved region. (301 aa)    
Predicted Functional Partners:
rny_4
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.873
dnaX_2
DNA polymerase III subunit tau.
  
   0.859
OOM81675.1
Hypothetical protein.
  
    0.845
OOM81678.1
Hypothetical protein.
       0.814
OOM75028.1
Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
 
   0.685
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.645
OOM81679.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.633
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.619
cheR
Chemotaxis protein methyltransferase.
    
 
 0.598
cheR2_1
Chemotaxis protein methyltransferase cher2.
    
 
 0.598
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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