Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OOM81679.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (56 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.990
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.990
OOM74513.1
Respiratory-chain NADH dehydrogenase 24 Kd subunit.
  
 0.979
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 0.979
hndC_2
NADP-reducing hydrogenase subunit HndC.
  
 0.978
hndD_1
NADP-reducing hydrogenase subunit HndC.
  
 0.971
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 0.971
mmgC
acyl-CoA dehydrogenase.
  
 0.949
hndA
NADP-reducing hydrogenase subunit HndA.
  
 0.944
OOM74516.1
Hypothetical protein; Iron only hydrogenase large subunit, C-terminal domain.
  
 0.942
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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