Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM81785.1Caudovirus prohead protease. (224 aa)    
Predicted Functional Partners:
OOM81784.1
Phage portal protein.
 
   
 0.962
OOM81782.1
Phage terminase.
 
     0.951
OOM81786.1
Phage capsid family protein.
 
     0.944
OOM81777.1
Hypothetical protein.
 
     0.888
OOM81783.1
Hypothetical protein.
       0.793
OOM81778.1
Hypothetical protein.
       0.778
OOM81779.1
Hypothetical protein.
       0.741
OOM81780.1
Hypothetical protein.
       0.741
OOM81781.1
Hypothetical protein.
       0.741
xkdM_2
Phage-like element PBSX protein XkdM.
 
     0.730
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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