Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xkdM_2Phage-like element PBSX protein XkdM. (141 aa)    
Predicted Functional Partners:
OOM81791.1
Phage tail sheath protein.
 
 
   0.979
OOM81799.1
Baseplate J-like protein.
 
 
   0.932
OOM81798.1
Hypothetical protein.
 
 
   0.928
OOM71106.1
Phage tail sheath protein.
 
 
   0.919
OOM71098.1
Hypothetical protein.
 
 
   0.915
OOM71102.1
Hypothetical protein.
 
 
   0.910
OOM72919.1
Phage tail sheath protein.
 
 
   0.906
OOM72928.1
Baseplate J-like protein.
 
 
   0.902
OOM71097.1
Baseplate J-like protein.
 
 
   0.901
OOM71096.1
Hypothetical protein.
 
 
   0.897
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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