Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lytA_3Autolysin. (251 aa)    
Predicted Functional Partners:
OOM81796.1
Hypothetical protein.
 
    0.880
OOM81798.1
Hypothetical protein.
 
     0.862
OOM81799.1
Baseplate J-like protein.
 
     0.818
lytA_16
Autolysin.
  
     0.770
lytA_19
Autolysin.
  
     0.767
lytB_1
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.762
lytA_4
Autolysin.
  
     0.762
OOM81797.1
Hypothetical protein.
       0.759
lytB_2
Putative endo-beta-N-acetylglucosaminidase precursor.
 
   
 0.748
lytB_3
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.739
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.