Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM81798.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
OOM81799.1
Baseplate J-like protein.
 
 
 0.987
OOM81791.1
Phage tail sheath protein.
 
 
 0.975
OOM81796.1
Hypothetical protein.
 
   0.968
OOM71106.1
Phage tail sheath protein.
 
 
 0.965
OOM72919.1
Phage tail sheath protein.
 
 
 0.961
OOM82329.1
Phage tail sheath protein.
 
 
 0.958
OOM82619.1
Hypothetical protein.
 
 
 0.957
OOM82508.1
Hypothetical protein.
 
 
 0.957
OOM78929.1
Hypothetical protein.
 
 
 0.957
OOM77524.1
Hypothetical protein.
 
 
 0.957
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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