Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
emrK_2Putative multidrug resistance protein EmrK. (329 aa)    
Predicted Functional Partners:
emrK_1
Putative multidrug resistance protein EmrK.
 
     0.922
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 0.879
mdtC_2
Multidrug resistance protein MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.852
mdtB
Multidrug resistance protein MdtB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.851
mdtC_1
Multidrug resistance protein MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.834
swrC
Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.827
emrB_1
Multidrug export protein EmrB; Belongs to the major facilitator superfamily.
  
 
 0.781
ybhS
Inner membrane transport permease YbhS.
 
  
 0.745
OOM81496.1
MarR family protein.
  
  
 0.744
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
  
 0.736
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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