STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxAMonomeric sarcosine oxidase. (464 aa)    
Predicted Functional Partners:
OOM81263.1
Hypothetical protein.
 
    0.939
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.920
trxB_3
Thioredoxin reductase.
 
 0.894
trxB_4
Thioredoxin reductase.
 
 0.884
niaR
Putative transcription repressor NiaR.
       0.859
OOM77129.1
Hypothetical protein.
 
    0.846
pphA
Phosphonopyruvate hydrolase.
    
 0.839
accB_2
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
  0.810
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.781
egsA
Glycerol-1-phosphate dehydrogenase.
 
  
  0.732
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.