Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OOM80993.1SpoIIIAH-like protein. (170 aa)    
Predicted Functional Partners:
OOM80994.1
Hypothetical protein.
 
  
 0.991
OOM80995.1
Stage III sporulation protein SpoIIIAF.
 
  
 0.979
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.950
OOM80998.1
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.913
OOM80999.1
Stage III sporulation protein SpoAB.
 
  
 0.905
OOM81000.1
Hypothetical protein; Transcription termination factor Rho.
  
  
 0.895
OOM80997.1
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.890
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.808
xseB
Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.798
OOM71124.1
LysM domain protein.
  
  
 0.787
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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